Number of matching predicted genes with 299 test genes using BLASTN (with 250, 500, and 1000 training genes).

Abbreviations:
gl = GlimmerHMM; aug = AUGUSTUS.
N/A = not applicable – the AUGUSTUS training program does not give the option to control the number of bases that precede and follow the coding segment (CDS) sequence of the training genes.
$$Number of predicted genes that align entirely or partly with the test genes and meet the criteria E-value  =  0 and 100% coverage – a value in brackets is the number of predicted genes that are exactly the same as the test genes i.e. each exon genomic coordinate is the same.
++Number of predicted genes that align to the same test gene i.e. the predicted gene is only a part of the entire test gene and there can be one or more predictions per test gene.
The values underlined indicate the highest number of matches for each gene finder.