Scanning the horizon for invasive plant threats using a data-driven approach

This repository holds the data and code for the manuscript "Scanning the horizon for invasive plant threats using a data-driven approach". 

Contents

code: descriptions below

data: descriptions below

intermediate-data: datasets produced by processing original data (see code) or produced through horizon scan process (descriptions below)

fl-plants-horizon-scan.Rproj: RStudio project for running R scripts

code
description

gcw_processing.R
R script to format data downloaded from the Global Compendium of Weeds

native_introduced_ranges.R
R script to create map of native and introduced ranges of taxa on the final list

random_draws_plant_families.R
R script to evaluate over- and underrepresentation of plant families in initial and final list

review_process_comparison.R
R script to evaluate differences in scores before and after peer-review and consensus-building

scores_certainty_pathways.R
R script to create figures of scores, certainty, and pathways for final list

risk_scores_analys.R
R script to evaluate final risk scores

pathways_process.R
R script to process pathways to introduction data

taxa_list_processing.R
R script to create list used for rapid risk assessments from an initial list

data
description

cab_list_full.csv
list of potential invasive species to Florida generated by CABI Horizon Scan Tool on November 15, 2019

GCW_full_list_020420.csv
Global Compendium of Weeds downloaded on February 4, 2020

PlantAtlasDataExport-20191211-194219.csv
Atlas of Florida plants downloaded December 11, 2019

Taxon_x_List_GloNAF_vanKleunenetal2018Ecology_121119.csv
GloNAF 1.2 database downloaded December 11, 2019

the-plant-list
The Plant List Database downloaded August 3, 2021

intermediate-data
description

federal_noxious_weed_list.csv
manually formatted version of the USDA Federal Noxious Weed List downloaded March 16, 2020

first_round_assessments_050120.csv
rapid risk assessments for horizon scan pre-peer-review

fl_prohibited_plants.csv
manually compiled list of prohibited plants in Florida based on the Florida Noxious Weed List, Florida Prohibited Plants list, and Florida Invasive Species Council (all downloaded March 9, 2020)

horizon_scan_plants_full_reviews_080321.csv
rapid risk assessments for horizon scan post-peer-review and consensus-building