Sampled patient metadata.

Table describing information from sampled SARS-coV-2-positive patients. Sample_Name, Patient sample name used for EDGE analysis and GISAID submission; Collection_YYYY.MM.DD, The year, month, and date that samples were collected from patients; Age, Patient age; Country, Patient country of origin; Location, Patient city of origin; Sex, Patient biological sex; Host_Status, Mortality status of patient; Vaccine, The type of vaccination the patient has recieved; n_Doses, The number of vaccine doses the patient has recieved; Category_Symptom, Patient rating of experienced symptoms; Symptom_Fever, Presence/absence of fever; Symptom_Pain_Joint, Presence/absence of joint pain; Symptom_Loss_Smell, Presence/absence of loss of smell; Symptom_Cough, Presence/absence of coughing; Symptom_Cold, Presence/absence of cold; Symptom_Loss_Taste, Presence/absence of taste loss; Symptom_Headache, Presence/absence of headache; Symptom_Breathing, Presence/absence of breathing difficulty; Symptom_Pain_Back, Presence/absence of back pain; Symptom_Pain_Chest, Presence/absence of chest pain; Symptom_Chills, Presence/absence of chills; CT, qPCR cycle threshold of detection; Reads_Raw, Quantity of raw sequencing reads; Reads_Clean, Quantity of sequencing reads passing quality filtering; cntg_n, The quantity of assembled contigs; cntg_max, Maximum contig size in base pairs; assembly_bp, Total base pairs in assembly; clade_Nextstrain, Nextstrain clade assignment of genome assembly.
(XLSX)