SNPsea: an algorithm to identify cell types, tissues, and pathways affected by risk loci

Updated May 20, 2014. This archive contains data for: Slowikowski, et al. <strong>SNPsea: an algorithm to identify cell types, tissues, and pathways that affect risk loci.</strong> Bioinformatics (2014). doi:10.1093/bioinformatics/btu326 Please see the SNPsea documentation for more details: http://snpsea.readthedocs.org/en/latest/data.html CONTENTS GWAS SNPs on hg19 with P &lt;= 5-e8 extracted from tables in pdfs. <strong>Celiac_disease-Trynka2011-35_SNPs.gwas</strong><br><strong>HDL_cholesterol-Teslovich2010-46_SNPs.gwas</strong><br><strong>Multiple_sclerosis-IMSGC-51_SNPs.gwas</strong><br><strong>Red_blood_cell_count-Harst2012-45_SNPs.gwas</strong> <strong></strong><strong> </strong> <strong>GeneAtlas2004.gct.gz</strong><br><em>- Gene Atlas 2004 gene expression matrix (Affymetrix)</em> <strong>ImmGen2012.gct.gz</strong><br><em>- ImmGen 2012 gene expression matrix (Affymetrix)</em> <strong>FANTOM2014.gct.gz</strong><br><em>- RIKEN FANTOM5 gene expression matrix (CAGE)</em> <strong>GO2013.gct.gz</strong><br><em>- Gene Ontology 2013 gene annotation matrix (binary annotations)</em> <em><br></em> <strong>NCBIgenes2013.bed.gz</strong><br><em>- Homo sapiens NCBI gene intervals</em> <strong>Lango2010.txt.gz</strong><br><em>- LD-pruned SNPs</em> <strong>TGP2011.bed.gz</strong><br><em>- 1000 Genomes Project SNP linkage disequilibrium (LD) intervals</em>