Bead-emulsion haplotyping (BEH) targeting 1, 2, or 3 SNP regions.

1Number of beads counted for a specific sequence string in a total of 500,000 beads. The “0” in the sequence string represents an empty position for which only background florescence was recorded. Beads positives for more than one allele (two alleles per SNP) derived from multi-template reactions were removed from the data.
2Ratio of alleles obtained for heterozygous DNA.
3Sum of beads informative for the queried SNPs relative to the total number of beads with a product. The sum of different types of drop-outs (“0” in sequence string) are shown for the multiplex reactions.