Python Code for Geometrical Pairwise Analysis of Biological Sequences Following Kabirian-based Isomorphic Optinalysis

Geometrical pairwise analysis (GPA) of biological sequences following Kabirian-based optinalysis looks at two biological sequences (i.e., DNA, RNA, and amino acid sequences) as isoreflective as a mirror-like reflection of each other about a central point [1]. It estimates the percentage similarity between two sequences. In the context of biological sequence analysis, geometrical pairwise analysis refers to the empirical ordering, sequence alignment, numerical encoding, and finally optinalysing of the established isoreflective pair for the given sequences [1].

Reference:
[1] K.B. Abdullahi, Kabirian-based optinalysis: A conceptually grounded framework for symmetry/asymmetry, similarity/dissimilarity, and identity/unidentity estimations in mathematical structures and biological sequences, MethodsX 11 (2023) 102400. https://doi.org/10.1016/j.mex.2023.102400