Mitochondrial genome sequence data for Magicicada species assembled from resequencing data

We assembled mitochondrial genome sequences, excluding control regions, for 60 resequenced individuals of seven Magicicada species (see List of samples) using 50–100 million paired-end reads per individual using NovoPlasty v4.3.5 (Dierckxsens et al., 2017). The assembled sequences were aligned using MAFFT v7 (Katoh and Standley, 2013) (deposited here as a fasta file), and a maximum-likelihood phylogeny was inferred using IQ-TREE v3.0.1 (Minh et al., 2020). Branch support was assessed with 1,000 ultrafast bootstrap replicates and the Shimodaira-Hasegawa-like approximate likelihood ratio test. The tree file has been deposited here.