Whole-genome ancestral reconstruction results: Amish data.

The second column shows the total number of IBD pairs identified between genotyped individuals. The third column shows the number of unique IBD segments per chromosome. The fourth column shows how many iterations the algorithm needed to converge. The fifth column shows the number of ancestral (ungenotyped) individuals we were able to successfully reconstruct. We require a successfully reconstructed chromosome to have two haplotypes that cover at least half the chromosome, with sufficient IBD support for each haplotype. Finally, the last column shows the runtime.