Revision of Family Megacalanidae (Copepoda: Calanoida)

Revision of Family Megacalanidae (Copepoda: Calanoida)

Janet M. Bradford-Grieve, Leocadio Blanco-Bercial, Geoffrey A. Boxshall

APPENDIX

Contents of the appendix:

PCR protocols: table indicating the PCR conditions for each marker.

AlignmentMrBayes.nex: nexus file containing the alignment used for the phylogeny, the partitioning by marker, and the MrBayes blocks. The alignment can be exported into fasta file using, for example, PGDSpider http://www.cmpg.unibe.ch/software/PGDSpider/

RAxML_commands: contains the commands used for the RAxML run

partS: partition used for the RAxML run

MrBayesTree.con: consensus phylogenetic tree from MrBayes

RAxMLTree_bipartitionsBranchLabels: raw phylogenetic tree from RAxML

MP_tree.nwk: Maximum Parsimony molecular-based tree, newick format.

NJ_tree.nwk: Neighbour Joining tree, newick format