Additional file 1 of Diversity of enzymes for exopolysaccharide synthesis in the fructophilic honeybee symbiont Apilactobacillus kunkeei

Additional file 1: Table S1. List of the NCBI accession numbers and names of the 106 A. kunkeei genomes, with the download date and time from NCBI. Table S2. List of the 38 groups of A. kunkeei genomes and the representative strains compared to the representative strains from Dyrhage et al. [18]. Table S3. List of GH70 genes in the 106 A. kunkeei genomes (strain, gene type, ID, position and length) and the domains that are contained in these genes. Table S4. List of GH32 genes in the 106 A. kunkeei genomes (strain, gene type, ID, position and length) and the domains that are contained in these genes. Table S5. PCR primer sequence information, including target strain and gene, locus tags, locus ID and primer sequence, length and Tm. Table S6. Sequence motifs in each GH70 domain. A) Gene ID and type and motif number, sequence and position. B) Summary of sequence motifs in each gene type. Table S7. Sequence motifs in each GH32 domain. A) Gene ID and type and motif number, sequence and position. B) Summary of sequence motifs in each gene type. Table S8. List of GH70 genes in bacterial species other than A. kunkeei (gene ID, gene type and motif number, position and length). Table S9. Synonymous (dS) and nonsynonymous (dN) substitution frequencies of gene sequences for GH70 domains compared to the mean dN and dS and median dN/dS for core genes in pairwise comparisons of A. kunkeei strains. Table S10. List of recombination events predicted by RDP5. Table S11. ClonalFrameML parameter estimates for phylogroup A and phylogroup B-C.