Nucleotide diversity for 100 kb windows V2

[17 files] Nucleotide diversity for each population calculated in 100kb windows. Seven different types of sites were considered: all sites, intergenic, intron, codon positions 1, 2 and 3, and four-fold degenerate (4D) sites. Dxy values between populations are also given, but these are based on just a single pair of samples and may be less accurate than those given in the dxy data. There are 8 files giving nucleotide diversity statistics considering only samples with at least 25x coverage - which should be more reliable. These correspond to the same seven site types listed above, plus one file for 4D sites only in genes showing minimal codon usage bias (CUB). There are also two files giving nucleotide diversity at intergenic sites and 3rd codon positions that were used to test whether the proportion of missing data in H. melpomene samples was correlated with nucleotide diversity.