Analysis of bacterial microbiome associated with nylon and copper nets in an aquaculture context

Bacterial pathogens represent a huge challenge for aquaculture profitability and fish welfare, particularly since they can naturally occur in the water column and fish microbiomes, appear associated with biofouling or establish biofilms on tanks, gear and nets. Copper nets are presently regarded as a good alternative to other traditional netting material, such as nylon, due to their high durability and low maintenance, no fouling establishment and also due to the antimicrobial properties of copper. Here we compared the bacterial microbiomes associated with nylon and copper nets in an aquaculture context, using a metataxonomic approach through the high-throughput sequencing of the 16S rRNA V4 hypervariable region. Bacterial diversity associated with nylon was significantly higher than the associate with copper nets. Additionally, among the most abundant bacteria colonizing copper nets there were taxa belonging to potential fish pathogens, and our study thus highlight the importance of monitoring the composition of bacterial communities established in aquaculture gear.