Data from: Speciation and historical invasions of the Asian black-spined toad (Duttaphrynus melanostictus)

This data package includes the following datasets analyzed in the corresponding publication: 

An alignment (fasta format) of 130,792 bp concatenating the RAD tags present in at least 80 of the 88 Duttaphrynus samples considered (Duttaphrynus_ddRADseq_n88p80_131kb.fas). It was used to produce the tree presented in Supplementary Fig. 1.

An alignment (fasta format) of 83,652 bp concatenating the RAD tags present in 25 unadmixed Duttaphrynus samples (Duttaphrynus_ddRADseq_n25p25_84kb.fas). It was used in the phylogenetic analyses presented in Fig. 1a and Supplementary Fig. 2.

Two alignments (fasta format) of 482,648 bp and 628,293 bp concatenating the RAD tags present in 17 and 52 samples of D. melanostictus s. s. and D. cf. melanostictus, respectively (Duttaphrynus_melanostictus_ss_West_n17p17_483kb.fas and Duttaphrynus_cf_melanostictus_East_n52p52_628kb.fas). These were used in the network analyses presented in Fig. 2b.

Three matrices of 851 SNPs, 3364 SNPs and 4782 SNPs, genotyped in 69, 17 and 52 samples of D. melanostictus s. l., D. melanostictus s. s. and D. cf. melanostictus, respectively (Duttaphrynus_melanostictus_sl_n69p69wrs_851SNPs.str, Duttaphrynus_melanostictus_ss_West_n17p17wrs_3364SNPs.str, Duttaphrynus_cf_melanostictus_East_n52p52wrs_4782SNPs.str). These were used in the Bayesian clustering and PCA analyses presented in Fig. 2a and Supplementary Figs. 3-4.

An alignement (fasta format) of 383 sequences of the mitochondrial gene 16S (558 bp), including 382 sequences of Duttaphrynus + 1 outgroup (Duttaphrynus_16S.fas). It was used in the network analysis presented in Fig. 3b and the phylogenetic analysis presented in Supplementary Fig. 5.

An alignement (fasta format) of 495 sequences of the mitochondrial gene ND3 (469 bp), including 494 sequences of Duttaphrynus + 1 outgroup (Duttaphrynus_ND3.fas). It was used in the network analysis presented in Fig. 3b and the phylogenetic analysis presented in Supplementary Fig. 6.

An alignement (fasta format) of 27 full or partial mitogenomes (16,844 bp), including 26 sequences of Duttaphrynus + 1 outgroup (Duttaphrynus_mitogenomes.fas). It was used in the phylogenetic analyses presented in Fig. 1b and Supplementary Fig. 7.

The meta-data associated to these datasets are provided in the corresponding publication (Supplementary Data 1 and 4).