Additional file 1 of A super-pangenome of the North American wild grape species

Additional file 1: Table S1. Accessions collected for the nine Vitis species. Table S2. PacBio Single Molecule Real-Time sequencing statistics. Table S3. Consensus genomes maps statistics. Table S4. RNA sequencing statistics. Table S5. Short-read DNA sequencing statistics. Table S6. N50 (bp) statistics at chromosome level. Table S7. Heterozygosity estimates from nucmer structural variants analysis. Table S8. Hemizygosity estimates from pairwise gene mapping analysis using GMAP. Table S9. Genome size estimations from flow cytometry and ploidy estimations using PN40024 gene representation. Table S10. Gene ontology enrichment analysis in the rapidly evolving gene families. Table S11. Structural variants coverage from pairwise assembly comparisons with nucmer. Table S12. Absolute and relative number of genes per class including the ambiguous class. Table S13. Absolute and relative number of genes per class without the ambiguous class. Table S14. Consistency statistics between the graph-inferred and the orthology-based gene pangenomes. Table S15. Proportion of rapidly evolving genes per pangenome class. Table S16. Consistency statistics between the variants identified with nucmer (inter-genome pairwise comparisons) and with vg deconstruct (pangenome graph). Table S17. SNP frequency estimates from graph decomposition using vg deconstruct. Table S18. Mapping on the pangenome statistics (vg map). Table S19. HaploSync runs.