Supplemental Material for Morton et al., 2020

Supplemental methods, figures, and tables accompanying Morton et al. manuscript "Challenges and Approaches to Genotyping Repetitive DNA" File S1 contains supplemental materials and methods and a list of tables Figure S1 contains Southern blots and ethidium bromide staining of CHEF gels Figure S2 contains droplet digital PCR condition optimization Figure S3 contains details of smMIP-based copy number estimation Figure S4 contains details of rDNA locus FISH characteristics for C. elegans strains Table S1 contains metrics from Nextera whole genome sequencing of C. elegans strains Table S2 contains percent error of rDNA copy number estimation for C. elegans strains Table S3 contains results of downsampling C. elegans WGS data Table S4 contains different aligner and trimming comparisons of C. elegans strains rDNA copy number estimate Table S5 contains coordinate of C. elegans single copy regions Table S6 contains WGS counts of C. elegans single copy regions Table S7 contains published yeast strain SRA numbers Table S8 contains yeast diploid strain rDNA estimates Table S9 contains yeast strain SNV genotyping Table S10 contains droplet digital PCR raw data Table S11 contains smMIP data Table S12 contains rDNA FISH summary cell counts Table S13 contains rDNA FISH data Table S14 contains sequences of oligos Table S15 contains band measurements from C. elegans CHEF gels