RNA-Seq analysis after overexpression of AtmiR165a in Arabidopsis Shoot Apical Meristem in clv3 mutant background

Results from experiments done on knock-down of adaxial class III HD ZIP genes, using overexpression of miR165a, in clv3 shoot meristem show that Class III HD-ZIP genes act generally to repress the formation of new growth axes where they are expressed. This study explored the genes directly regualted by miRNAs as well as indirectly regulated by class III HD-ZIPs. Overall design: Comparative gene expression profiling analysis of RNA-seq data arabidopsis SAM of clv3l mutant plants and ap1cal mutant plants expressing AtmiR165a under the Ubiquitin10 promoter.