five

Comparing expression patterns across species

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DataCite Commons2025-06-01 更新2024-07-25 收录
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https://figshare.com/articles/dataset/Comparing_expression_patterns_across_species/1362211/1
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This dataset contains protein sequences, normalized expression patterns, mapped expression patterns, 1:1 ortholog assignments and expression distances. <strong>File format of normalized datasets:</strong> protein_id - Protein identifier (taxon.protein) org_spec - tissue specificity org_spec_quantile rowsum - sum of expression in raw data rowsum_quantile [following columns: tissues of the target species] <strong>File format of expression distances between 1:1 orthologs:</strong> protein1 protein2 og1 correlation – weighted Pearson correlation between mapped and actual expression profile count – number of coexpressed genes in target species median_corr – median Pearson correlation of target gene to all other target genes species – target taxonomy id pv.one_to_one – quantile of correlation compared to 1:1 orthologs pv.og – quantile of correlation compared to orthologs pv.sf – quantile of correlation compared to larger family of homologs pv.bgH – quantile of correlation compared to unrelated genes, i.e. the <strong>expression distance</strong> <strong><br></strong>
提供机构:
figshare
创建时间:
2016-01-19
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