Additional file 7: of Genome analysis of Salmonella enterica subsp. diarizonae isolates from invasive human infections reveals enrichment of virulence-related functions in lineage ST1256

Figure S2. Maximum likelihood core-genome phylogeny (species tree) for 76 Salmonella spp. strains. The core-genome was inferred from the 303 top-scoring markers selected of the 1650 consensus clusters computed by GET_HOMOLOGUES. The bar represents the expected number of substitutions per site under the best-fitting GTR + F + ASC + R3 model. Internal nodes are colored by the combined approximate Bayesian support / ultra-fast bootstrap support values, respectively, as indicated on the legend. The inset shows the distribution of Robinson-Foulds gene tree distances to the species-tree. (XLSX 18 kb)