Genome-wide enhancer identification by massively parallel reporter assay in Arabidopsis. Arabidopsis thaliana

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植物增强子鉴定

STARR-seq

数据链接：

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1066551 数据链接链接失效反馈

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资源简介：

Identification of enhancers across the whole genome of A. thaliana with STARR-seq

创建时间：

2024-01-19

Identification of plant enhancers and their constituent elements by STARR-seq in tobacco leaves

植物增强子鉴定

STARR-seq

We developed a high-throughput assay in transiently transformed tobacco leaves that can identify enhancers, characterize their functional elements and detect condition-specific enhancer activity.

NIAID Data Ecosystem80

Additional file 6 of STARRPeaker: uniform processing and accurate identification of STARR-seq active regions

STARR-seq

基因组分析

Additional file 6: Supplementary Table S5. Sensitivity analysis of using alternative parameters against default parameters (bin 500 bp, step 100 bp, min 200 bp, max 1000 bp) using the HepG2 rep1 datas

DataCite Commons2024-02-14 更新40

Additional file 7 of Enhancer transcription detected in the nascent transcriptomic landscape of bread wheat

植物增强子鉴定

转录调控

Additional file 7: Supplementary Table S6. Location, eRNA level, and enhancer activity of 36 putative enhancers tested in wheat protoplasts.

Figshare2024-02-16 更新30

STARR-seq based mutagenesis of transcription factor binding sites. STARR-seq based mutagenesis of transcription factor binding sites

转录因子结合位点

STARR-seq

We performed a STARR-seq based, massively parallel reporter assay on reference genome and mutation-containing oligonucleotide sequences from regions associated with a large number of transcription fac

NIAID Data Ecosystem50

Genome-wide enhancer identification by massively parallel reporter assay in Arabidopsis. Genome-wide enhancer identification by massively parallel reporter assay in Arabidopsis

植物增强子鉴定

功能基因组学

Enhancers are critical cis-regulatory elements controlling gene expression during cell development and differentiation. However, genome-wide enhancer characterization has been challenging due to the l

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Genome-wide enhancer identification by massively parallel reporter assay in Arabidopsis. Arabidopsis thaliana

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