Hemaxi/3DVesselSegmentation

---
license: gpl-3.0
---

This repository contains the dataset used in our [work](https://github.com/HemaxiN/3DVesselSegmentation).

* masks: contains the 2D segmentation masks;
* stl: contains the 3D masks obtained using [PolNet](https://github.com/mobernabeu/polnet);

* **Dataset 1**:

| **Image** | **Size (X×Y×Z)** | **Train/Test** <br> **Split** |
| :--------------: | :--------------: | :-----------------------------: |
| PBS_ret1 | 5409×2979×31 | Train |
| PBS_ret2 | 3375×4599×56 | Test |
| PBS_ret3 | 6237×3384×38 | Test |
| PBS_ret4 | 5013×2979×43 | Test |
| PBS_ret5 | 4838×5561×39 | Test |
| PBS_ret6 | 4864×4864×88 | Test |
| PBS_ret7 | 6144×8192×20 | Test |
| sFLT1_ret1 | 4617×5418×35 | Train |
| sFLT1_ret2 | 4365×3978×73 | Test |
| sFLT1_ret3 | 4365×3600×66 | Test |
| VEGF_ret1 | 2979×4599×42 | Train |
| VEGF_ret2 | 5319×4878×61 | Test |
| VEGF_ret3 | 5427×4194×46 | Test |
| VEGF_ret4 | 5013×4194×38 | Test |
| VEGF_ret5 | 4365×3978×40 | Test |
| VEGF_ret6 | 4743×4365×61 | Test |
| VEGF_ret7 | 4365×4743×42 | Test |
| AngII_ret1 | 6273×3780×33 | Train |
| AngII_ret2 | 4851×5571×42 | Test |
| AngII_ret3 | 4864×3584×48 | Test |
| AngII_ret4 | 4864×5120×40 | Test |

* **Datasets 2, 3 and 4**:

| | **Image** | **Size (X×Y×Z)** |
| :------------- | :------------------------------ | :--------------- |
| **Dataset 2** | Captopril_ret1 | 4212×5427×35 |
| | Captopril_ret2 | 4194×5013×34 |
| | Captopril_ret3 | 4599×3789×36 |
| | Captopril_ret4 | 3206×3972×37 |
| | Captopril_ret5 | 3204×4365×54 |
| | Captopril_ret6 | 3600×4365×60 |
| | RGDS_ret1 | 3553×4000×67 |
| | RGDS_ret2 | 2258×3997×42 |
| | RGDS_ret3 | 3555×4428×48 |
| **Dataset 3** | FLIJ_ret1 | 4590×2160×27 |
| | FLIJ_ret2 | 3384×5427×35 |
| | FLIJ_ret3 | 2709×5733×41 |
| | FLIJ_ret4 | 3402×5445×35 |
| | FLIO_ret1 | 3388×2969×32 |
| | FLIO_ret2 | 3783×3375×43 |
| | FLIO_ret3 | 3378×3787×28 |
| | FLIO_ret4 | 5004×3798×27 |
| | FLIO_ret5 | 4428×2700×40 |
| | FLIO_ret6 | 4203×4212×31 |
| | FLIO_ret7 | 4608×5022×44 |
| | FLIO_ret8 | 5004×3798×38 |
| **Dataset 4** | YES_ret1 | 5632×6656×36 |
| | YES_ret2 | 4608×5632×36 |
| | YES_ret3 | 4608×4608×28 |
| | YES_ret4 | 4608×4608×32 |
| | YES_ret5 | 4608×4608×24 |
| | YES_ret6 | 4608×5632×20 |
| | YES_ret7 | 4608×5632×24 |

原始信息汇总

数据集概述

数据集1

Image	Size (X×Y×Z)	Train/Test Split
PBS_ret1	5409×2979×31	Train
PBS_ret2	3375×4599×56	Test
PBS_ret3	6237×3384×38	Test
PBS_ret4	5013×2979×43	Test
PBS_ret5	4838×5561×39	Test
PBS_ret6	4864×4864×88	Test
PBS_ret7	6144×8192×20	Test
sFLT1_ret1	4617×5418×35	Train
sFLT1_ret2	4365×3978×73	Test
sFLT1_ret3	4365×3600×66	Test
VEGF_ret1	2979×4599×42	Train
VEGF_ret2	5319×4878×61	Test
VEGF_ret3	5427×4194×46	Test
VEGF_ret4	5013×4194×38	Test
VEGF_ret5	4365×3978×40	Test
VEGF_ret6	4743×4365×61	Test
VEGF_ret7	4365×4743×42	Test
AngII_ret1	6273×3780×33	Train
AngII_ret2	4851×5571×42	Test
AngII_ret3	4864×3584×48	Test
AngII_ret4	4864×5120×40	Test

数据集2

Image	Size (X×Y×Z)
Captopril_ret1	4212×5427×35
Captopril_ret2	4194×5013×34
Captopril_ret3	4599×3789×36
Captopril_ret4	3206×3972×37
Captopril_ret5	3204×4365×54
Captopril_ret6	3600×4365×60
RGDS_ret1	3553×4000×67
RGDS_ret2	2258×3997×42
RGDS_ret3	3555×4428×48

数据集3

Image	Size (X×Y×Z)
FLIJ_ret1	4590×2160×27
FLIJ_ret2	3384×5427×35
FLIJ_ret3	2709×5733×41
FLIJ_ret4	3402×5445×35
FLIO_ret1	3388×2969×32
FLIO_ret2	3783×3375×43
FLIO_ret3	3378×3787×28
FLIO_ret4	5004×3798×27
FLIO_ret5	4428×2700×40
FLIO_ret6	4203×4212×31
FLIO_ret7	4608×5022×44
FLIO_ret8	5004×3798×38

数据集4

Image	Size (X×Y×Z)
YES_ret1	5632×6656×36
YES_ret2	4608×5632×36
YES_ret3	4608×4608×28
YES_ret4	4608×4608×32
YES_ret5	4608×4608×24
YES_ret6	4608×5632×20
YES_ret7	4608×5632×24