A list of SNPs initially identified by GWAS and re-examined in CMAS.

For each SNP, the method used (M), chromosome (CHR), RS number (RS), nucleotide types (NT) and gene information (GI) are shown. The results for combined samples and independent samples are shown as follows: (1) genotyping call rate (GCR(%)), (2) minor allele and minor allele frequency (MA:MAF), (3) p values of the exact HWE test (HWE), (4) exact p value of the ULR-NOMINAL analysis [model: logit{Prob(Y = YOH|I11,I12,IGender,ZAge} = a0+a11��I11+a12��I12+a2��IGender+a3��ZAge] and (5) exact p value of the ULR-ORDINAL analysis [model: logit{Prob(Y = YOH|X,IGender,ZAge)} = a0+a1��X+a2��IGender+a3��ZAge], where Y is YOH status, I1j is an indicator of the three genotypes (j = 1, 2) of a SNP, IGender is an indicator of gender, ZAge is a covariate for age, and X is a variable for the number of reference alleles.