HyRAD-X exome capture museomics unfolds giant ground beetle evolution
收藏资源简介：
This dataset contains all final files from the study entitled "<em>HyRAD-X exome capture museomics unfolds giant ground beetle evolution</em>" and published in <em>Genome Biology and Evolution</em>. To access the raw data of the HyRAD-X project please go to the SRA database and look for the <strong>BioProject ID PRJNA706141</strong>. <strong>Phylogenomic Datasets and partitioning schemes used in the study:</strong> A_2945_BWA_MEM_loci_43_Taxa.phy / HyRAD-X Dataset A <br> A_2945_BWA_MEM_loci_partition.nex / Partitioning scheme for Dataset A<br> B_2945_BWA_MEM_loci_40_Taxa.phy / HyRAD-X Dataset B <br> C_1227_BWA_ALN_loci_40_Taxa.phy / Partitioning scheme for Dataset B <br> C_1227_BWA_ALN_loci_partition.nex / HyRAD-X Dataset C <br> D_100_BWA_MEM_loci_43_Taxa.phy / HyRAD-X Dataset D <br> D_100_BWA_MEM_loci_partition.nex / Partitioning scheme for Dataset D <br> E_MtGenomes_60_Taxa.phy / Mitogenomic Dataset E <br> E_MtGenomes_partition.nex / Partitioning scheme for Dataset E <strong>Divergence time estimation datasets used in the study: </strong> HyRAD-X_BEAST_100loci_SortaDate.nex / Input alignment for BEAST analysis based on SortaDate selection <br> HyRAD-X_BEAST_100loci_SortaDate_BD_1C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_BD_7C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_Yule_1C_2F2SC_40TAX.xml / XML input file for BEAST <br> HyRAD-X_BEAST_100loci_SortaDate_Yule_7C_2F2SC_40TAX.xml / XML input file for BEAST <strong>Final tree files used in the study: </strong> ML Phylogeny Dataset A BWA MEM 43 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset A <br> ML Phylogeny Dataset B BWA MEM 40 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset B <br> ML Phylogeny Dataset C BWA ALN 40 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset C <br> ML Phylogeny Dataset D BWA MEM SortaDate 43 Taxa.tre / .tre file from best scoring IQ-TREE ML search using Dataset D <br> ML Phylogeny Dataset E Mitogenomes.tre / .tre file from best scoring IQ-TREE ML search using Dataset E <br> Bayesian BEAST MCC Tree Yule 7C.tre / .tre file from best scoring BEAST analysis For any additional information feel free to contact us at: <strong>Emmanuel.Toussaint@ville-ge.ch</strong>
