Waxholm Space atlas of the Sprague Dawley Rat Brain V4.2 ASR - BigDataViewer Xml/Hdf5 File Format

This dataset is the Waxholm Space atlas of the Sprague Dawley Rat Brain V4 atlas converted to a Fiji BigDataViewer compatible file format.

To cite this dataset, please follow the citation policy of the authors of this atlas.

Channels:

T2star_v1.01 masked by the label image

T2star_v1.01 full data

LABELS BORDER, a channel generated by delineating the original labels

LABELS, the label image of the atlas

ilf file : ontology structure

Compared to the previous version, the first channel is the result of the second channel masked by the presence of labels (last channel). This allows to use more easily automated registration methods.

The version 4.1 had an issue with the left/right definition (but not the 4.0)

https://forum.image.sc/t/help-for-abba-in-fiji-rat-atlas-tags-atlas-regions-on-both-hemispheres-as-belonging-to-the-right-hemisphere/83020

The only modification between this version and the previous one is to use an ASR convention for the positioning in 3D. It will match exactly the BrainGlobe atlases.