A single-cell transcriptomic dataset of enterocyte-specific HHEX knockdown in the Drosophila larval midgut
收藏DataCite Commons2025-12-24 更新2026-04-25 收录
下载链接：
https://springernature.figshare.com/articles/dataset/A_single-cell_transcriptomic_dataset_of_enterocyte-specific_HHEX_knockdown_in_the_Drosophila_larval_midgut/28927709
下载链接
链接失效反馈官方服务：
资源简介：
This project provides public access to all reproducible scripts, raw matrix, and annotated integrated matrices associated with the research publication, including the following:
1. Analysis Pipeline Scripts
00.geth5ad.py: Raw data preprocessing and conversion to AnnData format
01.qc.py: Quality control for single-cell data
02.scvi.py: Multi-library integration using the scVI algorithm
03.clu.py: Cell clustering and subpopulation annotation
04.cell_changes.py: Statistical analysis of cell abundance variations
2. Raw Data Files
Ctrl-1.zip: Raw matrices for Control Sample 1 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
Ctrl-2.zip: Raw matrices for Control Sample 2 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
KD-1.zip: Raw matrices for Knockdown Sample 1 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
KD-2.zip: Raw matrices for Knockdown Sample 2 (barcodes.tsv.gz, features.tsv.gz, matrix.mtx.gz)
3. Annotated Integrated Matrix
NP1_HHEX_anno.h5ad: Integrated matrix in standard AnnData format
1. Cell type annotations: .obs['anno']
2. Sample identifiers: .obs['samples']
3. Raw expression matrix: .layers['counts_X']
提供机构：
figshare
创建时间：
2025-05-04
