Data and scripts in Huang et al. "Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota"

This compressed file includes six folders:

1_single_protein_trees_of_orthologs:

Alignments and treefiles used in the "Selection of orthologs for phylogenetic analysis of Woesearchaeota".

2_phylogenetic_trees_Woese&Pace:

Alignments and treefiles of 152 MAGs for phylogenetic analysis based on 15 ribosomal proteins and the top-50% ranked orthologs

3_16S_rRNA_gene:

Alignments and treefiles used in the 16S rRNA gene phylogenetic analysis

4_individual_protein_trees:

Alignment and treefiles used in the phylogenetic analyses in fig.4, suppl. fig6-7, suppl. fig9-22 and suppl. fig24-41

5_protein_families_52_MAGs:

The file includes alignment and treefile of phylogenetic analysis of 52 MAGs, ALE reconciliation results and protein families files

6_scripts

Python scripts used in phylogenetic analysis and R scripts used in ecological analysis

7_protein_files

Proteins faa files and annotation files