DNA_FISH_A_compartment_consolidation

DNA_FISH_A_compartment_consolidation/│├── DNA_FISH_A_consolidation_README.txt # Guide to scripts and figures 5E-F, S12G│├── chr15/ # Chromosome 15 BAC probes│ │ # (slide1_* = bio rep1, slide2_* = bio rep2)│ ├── FISH_coordinates/ # Centroid coordinates (x,y) per image│ │ └── all_FISH_coordinates.xlsx # Combined coordinates (all images)│ ││ ├── Images/ # Deconvoluted, maximum-projected images│ ││ ├── ROI_FISH_assigned_to_nuclei_allele_clustered/ # ROI lists with color, nucleus, and allele ID│ ││ └── ROI_nuclei/ # Nuclei ROI lists for all images│├── chr2/ # Chromosome 2 BAC probes│ │ # (slide1_* = bio rep1, slide2_* = bio rep2)│ ├── FISH_coordinates/ # Centroid coordinates (x,y) per image│ │ └── all_FISH_coordinates.xlsx # Combined coordinates (all images)│ ││ ├── Images/ # Deconvoluted, maximum-projected images│ ││ ├── ROI_FISH_assigned_to_nuclei_allele_clustered/ # ROI lists with color, nucleus, and allele ID│ ││ └── ROI_nuclei/ # Nuclei ROI lists for all images│└── scripts/ # Scripts for figures 5E-F, S12G