Data Associated with "Domain-adaptation deep learning models do not outperform simple baseline models in single-cell anti-cancer drug sensitivity prediction"

This Zenodo record contains all data necessary to reproduce the benchmark results described in the following publication: M. Bohl, M. Esteban-Medina, N. Beerenwinkel, and K. Lenhof, Domain-adaptation deep learning models do not outperform simple baseline models in single-cell anti-cancer drug sensitivity prediction, bioRxiv (2026). Processed bulk and single-cell RNA-Seq datasets with response labels are in processed.zip. scATD model weights are in checkpoint_fold1_epoch_30.pth Full hyperparameter tuning logs/results are in hyperparam_tuning_results.csv A revised version of the source code (without model weights) is in code.zip. If it gets updated in the future, check the latest version at https://github.com/cbg-ethz/SC-Bulk-Domain-Adaptation/