Supplementary Tables Thesis AMGM Chapter IV

Supplementary Tables generated for the fourth chapter of the thesis titled 'Novel whole-genome sequencing approaches to study drug resistance, transmission, and evolution of the Mycobacterium tuberculosis complex'. Author: Ana María García Marín. Insituto de Biomedicina de Valencia (IBV-CSIC) and Universitat de València.
The document, in Excel format, contains:
Table S4.1. Pairwise genetic distances between closely related samples.Table S4.2. List of non-redundant annotated mutations between closely related complete genomesTable S4.3. Assessment of variant calling in positions masked by the short-read mapping approach.Table S4.4. Genetic distances between isolates from the same transmission network.Table S4.5. Cluster- and patient-specific reference genomes and related samples.Table S4.6. Mapping quality control using common and closer reference genomes.