Experimental results of running our algorithm on selected sets from the data sets [27], [28] using

(a)Count the number of different motifs. For non-overlapping motifs we only consider motifs if their starting position is further apart than their length.
(b)The starting position is based on index starting at 0. We followed [26] in treating each of the sequences as a single string. For example, yst09r.fasta is composed of 16 substrings each having 1000 nucleotides. These are merged into a single string with 16000 nucleotides.
This set includes real (sequences suffixed ‘r’), generic (sequences suffixed ‘g’), and markov (sequences suffixed ‘m’) data sets. Only larger sized identical string motifs are reported.