Phenotypic analysis of the pediatric immune response to SARS-CoV-2 by flow cytometry

This repository contains all raw data files for unbiased clustering using the R‐based algorithm PhenoGraph, as well as the concatenated .fcs files containing the Uniform Manifold Approximation and Projection analysis (UMAP). The data have gone through cleanup and manual compensation adjustments using the attached matrices. For further details see the publication.
Notes:
Panel 1 = Panel T. Panel 2 = Panel B. See "Experiment Date" in the .fcs metadata of Panel B for the corresponding compensation matrix. For Panel T, acquisition defined compensation was applied. See Methods and Supplementary Data.