A curated data resource of 214K metagenomes for characterization of the global resistome

<strong>Data files of the curated resource of 214K metagenomes </strong> <strong>for characterization of the global resistome.</strong> We have retrieved 214K metagenomic samples and now share the results here on Zenodo of our large-scale read mapping effort. There are five tables uploaded in three formats (TSV, HDF and MySQL dump): metadata.* : contains metadata for all sequencing runs. ARG.* : contain read alignment counts of antimicrobial resistance genes (ARGs). rRNA.* : contain read alignment counts of 16S/18S rRNA genes.¹ diversity.* : contain diversity measures for ARGs and two taxonomic groups of rRNA genes (phylum, genus). ResFinder_anno.* : contain sequence information on the different ARGs, such as gene_lengths, resistance class, etc. Note that the HDF file rRNA.h5 is split into batches of 10,000 rows. To load it, the keys are in the format of "table_{i}", where i=0,1,2,..,4736 Details on the different tables are available at https://hmmartiny.github.io/mARG/ Additionaly, we have shared the data used to create the figures in the manuscript in the ZIP file named "figure_data.zip". Any further questions or issues, please contact H.-M. Martiny at [e-mail] <strong>Update log</strong>: * 2023-01-20: Update Diversity tables due to wrong total_fragments entered for ~250 run_accessions.