five

Matching mutant raw reads example.

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NIAID Data Ecosystem2026-03-09 收录
下载链接:
https://figshare.com/articles/dataset/Efficient_In_Silico_Identification_of_a_Common_Insertion_in_the_MAK_Gene_which_Causes_Retinitis_Pigmentosa/1600769
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Using the command “zgrep GAAAAAAGGAGGCCGGGCGCGGT D00379_000148_GCCAAT_L001_R2_001.fastq.gz”, 23 reads were obtained. The reads were aligned manually for display purposes and the sequence matching the probe was underlined. A space was added before the canonical 5’ end of the Alu insertion (GGCCGGG…). The read length of 121 bp was too short to span the entire Alu insertion (even if each read was computationally merged with its mate pair, not shown). (DOCX)
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2015-11-11
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