Example data for "Characterization of tumour heterogeneity through segmentation-free representation learning on multiplexed imaging data"

This repository includes two example dataset and configurations for running CANVAS (https://github.com/tanjimin/CANVAS). The repostory is structured as follows: ├── Kim_2022│ ├── configs│ │ ├── config.yaml│ │ └── preprocess│ │ ├── channels_vis_strength.yaml│ │ └── selected_channels_w_color.yaml│ └── data│ └── raw_data│ ├── common_channels.txt│ └── image_files└── Sorin_2023 ├── configs │ ├── config.yaml │ └── preprocess │ ├── channels_vis_strength.yaml │ └── selected_channels_w_color.yaml └── data └── raw_data ├── common_channels.txt └── image_files The source IMC data from this repository are from Kim et al. 2022 (https://www.nature.com/articles/s41592-022-01657-2) and Sorin et al. 2023 (https://www.nature.com/articles/s41586-022-05672-3). They are avaiable at: https://zenodo.org/records/4110560 and https://zenodo.org/records/7760826.