MOESM3 of Origin and recent expansion of an endogenous gammaretroviral lineage in domestic and wild canids

Additional file 3: Table S2. Information for non-reference sites considered in analyses. The coordinates relative to CanFam3.1 are provided for each identified non-reference insertion. For each site, information pertaining to the insertion orientation, target site duplication (relative to the CanFam3.1 reference), detected insertion alleles (provirus, solo LTR), and element sequence is provided. Primer sequences are provided for validated sites. (A) Information for sequenced loci and validated sequences. (B) Information for loci with complete assembled insertion alleles. (C) Information for loci with partially assembled insertion alleles.