README

List of the Supplementary Data files Supplementary Data file 1: The volcano plots for each infection and timepoint Supplementary Data file 2: The OPLS-DA plots for each infection and timepoint Supplementary Data file 3: Normalized metabolite peak intensity (positive ion mode) in four phage infections and control populations Supplementary Data file 4: Normalized metabolite peak intensity (negative ion mode) in four phage infections and control populations Supplementary Data file 5: List of metabolite peaks (positive ion mode) significantly changed in phage infection relative to control populations at corresponding time points Supplementary Data file 6: List of metabolite peaks (negative ion mode) significantly changed in phage infection relative to control populations at corresponding time points Supplementary Data file 7: The number and percentage of total peaks significantly changed (p ≤ 0.05 and VIP ≥ 1) shared among multiple phage infections Supplementary Data file 8: Source data for venn and upsets plots Supplementary Data file 9: The p value for the pathway enrichment analysis Supplementary Data file 10: List of significantly changed metabolites shared in all or three phage infections