RNA-Seq analysis of the flavonoid-deficient Arabidopsis line, tt4-11

This is the first analysis of an Arabidopsis flavonoid mutant line by RNA-Seq, specifically, the chalcone synthase-deficient line, tt4-11. There is one other publically-available microarray dataset for a related allele, tt4-3 (Nakabayashi et al., Plant J. 2014). The data provide evidence for alterations in circadian clock and clock-controlled gene expression in the absence of chalcone synthase protein and/or flavonoid endproducts. tt4-11 and Col-0 (WT) were grown under conditions that are known to promote flavonoid production