Concordance rates of SNVs called by VarScan2 program between replicated samples and after removal of duplicated reads.
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https://figshare.com/articles/dataset/_Concordance_rates_of_SNVs_called_by_VarScan2_program_between_replicated_samples_and_after_removal_of_duplicated_reads_/1472207
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Column one (Unfiltered) contains all SNV calls generated using default parameters except for requiring p-value less than 0.05. Column two contains SNV calls that were filtered based on results from pooled SNV calls as shown in Fig 2. Column three contains SNV calls that were filtered based on results from categorized SNV calls as shown in Fig 3. Row two (Remove dup) shows the same variables after removal of duplicated reads.
a Significantly different from the concordance rates of unfiltered SNV calls (p-value < 10-10).
b Significantly different from the concordance rates of filtered by criteria based on pooled SNV calls (p-value = 0.013).
Concordance rates of SNVs called by VarScan2 program between replicated samples and after removal of duplicated reads.
创建时间：
2015-07-02
