(16s) No 2. Data Preparation (16S rRNA) Output

Output files from the No 2. Data Preparation Workflow page of the Bocas Hypoxia study. File names and descriptions: ***seq_table.txt, *_tax_table.txt, *_asv.fasta:** Sequence tables, taxonomy tables, and ASV fasta files from the **full** phyloseq object (before removing contaminants) and the **trim** med dataset (after removing contaminants). **16s-data_prep.rdata:** contains all variables and phyloseq objects from the data prep pipeline. To see the **Objects** , in R run _load("16s-data_prep.rdata", verbose=TRUE) _