The rapid and effective identification of pathogens in patients with pulmonary infections has posed a persistent challenge in medicine, with conventional microbiological tests proving time-consuming a
*BWA-MEM algorithm. All SNPs called at > = 6 bp depth. Comparison of SNP calls between tools from a simulated dataset. PET synthetic reads were generated from a reference with 652,256 planted SNPs. Th
Rapid advancements in sequencing technologies along with falling costs present widespread opportunities for microbiome studies across a vast and diverse array of environments. These impressive technol
