Gut microbiota of wild arboreal and ground-feeding tropical primates

16S rRNA gene and ITS sequences from fecal samples of 12 groups of Udzungwa (Tanzania) red colobus Procolobus gordonorum (total number of samples: 89), and five groups of yellow baboon Papio cynocephalus (total number of samples: 69). The dataset consists of the following files: 16S_raw.tar: raw 16S rRNA gene sequences; 16S_filtered.fasta.gz: merged, adapter trimmed and quality filtered 16S rRNA gene sequences; 16S_ID.txt: 16S file ID to sample ID mapping; ITS_raw.tar: raw ITS sequences; ITS_filtered.fasta.gz: merged, adapter trimmed and quality filtered ITS sequences; ITS_ID.txt: ITS file ID to sample ID mapping; Metadata.tsv: sample metadata; Accessions.tsv: ENA project and sample accessions; Helminths.tsv: helminths abundances table.