Table_S3_summary_bacteria_sample_features

<strong>Table S3</strong>. Key features of the bacterial samples. Fraction is the fraction of all genes that were plasmid-encoded. Plasmid_Plasmid_PPI is the number of PPIs exclusively between plasmid-encoded proteins. Plasmid_PPI is the number of PPIs between a chromosomal protein and a plasmid protein. Chrom_PPI is the number of PPIs between chromosomal proteins. PPIs is the total number of PPIs. CTri indicates the number of chromosomal protein trios. Loops indicates the number of indirect connections for chromosomal proteins. Ccs indicates the number of connected components for chromosomal proteins. CTri_all indicates the number of all protein trios. Loops_all indicates the number of indirect connections for all proteins. Ccs_all indicates the number of connected components for all proteins. APMNLE indicates the chromosomal proteins' aPMNLE (indirect connectivity). APMNLE_all indicates the aPMNLE for all proteins. DiffPMNLE stands for the % difference in aPMNLE when plasmid proteins are added to the chromosomal ones. Proteins_ccs_all is the number of connected components per protein for all proteins. Proteins_ccs_chrom is the number of connected components per protein for chromosomal proteins. Indirect_all is the number of indirect connections per protein for all proteins. indirect_chrom is the number of indirect connections per protein for chromosomal proteins. <br> Table S3 for n=4432 contains samples for which data was not accessible are included here, but can be removed for analysis. Data with no value is marked "NA", which means either the calculation was not possible, and/or there was no information on that feature.