<strong>Predictive modelling of response to neoadjuvant therapy in HER2+ breast cancer</strong>

Processed sequencing data files from " <strong>Predictive modelling of response to neoadjuvant therapy in HER2+ breast cancer</strong>" <br> Methods are described in the publication <br> 1. Annnotated somatic mutation data from whole exome DNA-Seq (WXS) <strong>(.maf)</strong> 30 tumour samples from 22 patients hg38 reference genome <br> 2. Somatic copy number calls from whole exome DNA-Seq (WXS) <strong>(.txt &amp; .RData)</strong> FACETS somatic copy number calling hisens (high sensitivity; cval=25) cncf .rds output from facets for each sample is stored in the .RData object txt file contains per sample, protein coding gene level copy number calls <br> 3. Normalised Gene Expression Counts from RNA-Seq <strong>(.xlsx)</strong> 13 pre-treatment tumour biopsy samples collected from patients with early stage HER2+ breast cancer who subsequently received anti-HER2 and chemotherapy neoadjuvant treatment GRCh37 reference genome