A systems genomics and genetics approach to identify the genetic regulatory network for lignin content in Brassica napus seeds

This file include the normalized datasets of the SG lines that were averaged across replications. Probes with intensities over 20 and with a frequency less than 30 percent from our datasets were treated as non-significant signal probes and removed, resulting in a final total of 29,752 quality probes. The log2 transformed normalized data were treated as gene expression traits (e-traits) and were used to perform eQTL analysis.