Additional file 5 of Searching for homozygous haplotype deficiency in Manech Tête Rousse dairy sheep revealed a nonsense variant in the MMUT gene affecting newborn lamb viability

Additional file 5: Table S3. Clustering 20-SNP haplotypes into MTRDHH regions. The table shows all significant haplotypes of 20 markers (20-SNP haplotypes with frequency > 1%, P-value < 1.9 × 10−4 and deficit ≥ 75%). As described in the Methods section, some of the consecutive 20-SNP haplotypes could be clustered into five MTRDHH regions based on similar parameters. Table S4. SNPs defining the MTRDHH regions. The table gives the position of each SNP within the MTRDHH regions according to the sheep reference genomes Oar_v3.1, Oar_rambouillet_v1.0 and ARS-UI_Ramb_v2.0, and the phased alleles of each deficient haplotype.