Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney)

Segmentation description: Nuclei segmentations in jrc_mus-kidney using Cellpose 3.0.9 with cursory manual corrections.Software: Cellpose 3.0.9Software DOI: https://doi.org/10.1038/s41592-022-01663-4Prediction Duration (seconds): 542.62GPU: NVIDIA TITAN RTXRAM: 251.0 GiBLabel voxel size (nm): 128 x 128 x 128 (x, y, z)Reconstructed data dimensions (µm): 98.3 x 63.6 x 177.6 (X, Y, Z)Classes annotated: NucleusSource dataset (EM) ID: jrc_mus-kidneySource dataset (EM) voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z)Source dataset (EM) data dimensions (µm): 98.3 x 63.6 x 177.6 (X, Y, Z)Source dataset (EM) DOI: https://doi.org/10.25378/janelia.16913035Dataset URL: s3://janelia-cosem-datasets/jrc_mus-kidney/jrc_mus-kidney.zarr/recon-1/labels/inference/segmentations/nuc/Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-kidney