EvoWeaver Supplemental Datafiles

This dataset contains additional files related to EvoWeaver. The following are included: ComplexSpeciesTree.RData: Species tree for Complexes benchmark ModulesSpeciesTree.RData: Species tree for Modules benchmark ProteinComplexTrees.RData: All phylogenetic trees for Complexes benchmark ModulesEvoWeaver.RData: EvoWeaver object for Modules benchmark ModulesPositionData.RData: Gene index information for Modules benchmark ModulePredsAllPairs.RData: predictions for all pairs of modules ModuelsMulticlassData.RData: multiclass classification data for Modules benchmark COG.links.detailed.v12.0.txt.tar.gz: STRING evidence streams between COGs (compressed, 1.44GB uncompressed) COG.mappings.v12.0.txt.tar.gz: STRING COG definitions (compressed, 5.80GB uncompressed) Note that internal algorithm names (e.g., those in ModulePredsAllPairs.RData) may not exactly match those in published material due to computational requirements (e.g., difficulty naming functions/variables with special characters). See the GitHub page for a description of which internal names correspond to algorithms in the text.