The transcriptome landscape of Tuber magnatum

Illumina HiSeq technology was used to generate mRNA profiles from Tuber magnatum truffles, free-living mycelium and oak mycorrhizal root tips. Paired-end reads of 100 bp were generated and aligned to Tuber magnatum reference transcripts using CLC Genomics Workbench 9. mRNA profiles from truffles, free-living mycelium and oak mycorrhizal root tips of T. magnatum were generated by Illumina HiSeq2000 sequencing (2x100bp). Three biological replicates from each tissue were sequenced.