Coarse-grained molecular dynamics (CGMD) simulation technique (MARTINI force field) is applied to monitor the aggregation of helical peptides representing the transmembrane sequence and its extension
The TEAM force-field database is extended to cover room-temperature ionic liquids (IL). The training set for parametrization includes 11 cations in five classes, imidazolium, pyridinium, pyrrolidinium
This repository contains the python scripts required for running coarse-grained simulations of columnar ionic liquid crystals, as detailed in the corresponding manuscript. The scripts have been tested
This dataset is released in conjunction with the paper “Bond Order Predictions Using Deep Neural Networks." The dataset consists of 436,938 ordinary organic molecules, their geometries, and bond order