Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models
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下载链接：
https://zenodo.org/record/6598185
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资源简介：
This is the data repository to the manuscript "Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models".
It contains a minimal data set to reproduce all results that don't compromise the privacy concerns.
The repository contains the following data:
adaptscore_acute.csv
A csv file that contains the estimated adaptation scores for the acute data set with HLA I model.
adaptscore_leftout.csv
A csv file that contains the estimated adaptation scores for the leftout data set with the joint HLA I and HLA II model
adaptscore_training.csv
A csv file that contains the estimated adaptation scores for the traininig data set with the joint HLA I and HLA II model
adaptscore_training_hla1_without_clin.csv
A csv file that contains the estimated adaptation scores for the training data set with the HLA I model (via cross-validation)
adaptscore_training_seed2.csv
A csv file that contains the estimated adaptation scores for the training data set with the joint HLA I and HLA II model via cross-validation with another seed
env_leftout.fasta
A fasta file that contains the consensus nucleotide sequences for the env protein for the leftout data set
env_nt_274.fasta
A fasta file that contains the consensus nucleotide sequences for the env protein for the training data set
gag_leftout.fasta
A fasta file that contains the consensus nucleotide sequences for the gag protein for the leftout data set
gag_nt_274.fasta
A fasta file that contains the consensus nucleotide sequences for the gag protein for the training data set
创建时间：
2023-01-01
