Gene expression counts from amniotic fluid cells
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https://zenodo.org/record/7079683
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资源简介：
File description:
Gene-level counts using the gtf file from the release 29 of GENCODE https://www.gencodegenes.org/human/release_29
Split counts spanning from one exon to another using an annotation-free algorithm, therefore capturing new splice sites
Non-split counts covering exon-intron boundaries
Sample annotation describing each sample from the dataset
Description file with global information from the dataset
Use: The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired end specifications match. Afterwards, the DROP pipeline can be used to compute expression and splicing outliers (https://github.com/gagneurlab/drop).
Maintainer: Vicente A. Yépez, yepez@in.tum.de
Title: Gene expression and splicing counts from amniotic fluid cells
Number of samples: 56
Tissue: Amniotic fluid cells
Organism: Homo sapiens
Genome assembly: hg19
Gene annotation: gencode29
Disease ICD-10: Q89: F2100984A and F2100985, Q23: F1901567 and Q74: F2000845
Strand specific: False
Paired end: True
Cite as: Cite both the resource using Zenodo's citation and the publication under References
Dataset contact: Brian Chung bhychung@hku.hk
Comments: A total of 56 RNA-seq samples were used for running pipeline. Out of those, 52 samples were included in the manuscript.
创建时间：
2022-09-18
